2 L and 3E). Transcripts for irf7, ifngr1, and ifrd1 were detectable in the fertilized and unfertilized eggs of all females used in the qPCR studies ( Figs. 3 F–H and 4 F–H). qPCR with fertilized eggs showed that irf7 transcript expression ranged from an RQ of 1.0

(female 10) to an RQ of 26.8 (female 5), while in unfertilized eggs it ranged from an RQ of 1.0 (female 3) to 46.8 (female 9) ( Supplemental Table 11 and Supplemental Table 13). In both the fertilized and the unfertilized egg qPCR studies, ifngr1 transcript expression was lowest for female 3 (RQ of 1.0 for both studies) and highest for female 12 (RQ of 5.4 and 4.6 for fertilized and unfertilized eggs, respectively) ( Supplemental Table 11 and Supplemental Table 13). It is interesting to note that female

12 had the highest total mortality at 7 dpf (97.4%) ( Fig. 1C). For both fertilized and unfertilized eggs, female 13 (one of the Selleckchem SB203580 two “lowest quality females”) had the highest ifrd1 transcript expression (> 4-fold above the lowest expressing female) BIBW2992 solubility dmso ( Figs. 3H and 4H; Supplemental Table 11 and Supplemental Table 13). There was no correlation between irf7, ifngr1, or ifrd1 transcript expression and egg quality in fertilized or unfertilized eggs ( Supplemental Figs. 2 M-O and 3 F-H) when all females were considered. To allow for future research on cod ddc function in early development (e.g. gene overexpression or knockdown studies), a complete ddc cDNA sequence is needed. Therefore, we characterized the Atlantic cod ddc transcript and performed molecular phylogenetic analysis to explore evolutionary relationships between DDC sequences from various species. The full-length cDNA sequence for Atlantic cod ddc was deposited in GenBank under accession number KC751533. Atlantic cod ddc is a 2527 bp cDNA that contains a 109 bp 5ʹ untranslated region (UTR), a 1461 bp open reading frame, and a 957 bp 3′ UTR, and encodes a 486 amino acid protein

( Fig. 5) which has a predicted molecular mass of 54.9 kDa and an isoelectric point of 5.56. The molecular phylogenetic tree arising from a multiple sequence alignment of Atlantic cod DDC with putative orthologues from various BTK inhibitor invertebrate and vertebrate species shows that: 1) DDC sequences from three species within the superorder Acanthopterygii [torafugu (Takifugu rubripes), Nile tilapia (Oreochromis niloticus) and Japanese medaka (Oryzias latipes)] share a branch, and are more distantly related to DDC from zebrafish (superorder Ostariophysi) and Atlantic cod (superorder Paracanthopterygii); 2) as expected, these teleost fish DDC sequences are more distantly related to tetrapod DDC sequences; and 3) all vertebrate DDC sequences group separately from the invertebrate DDC sequences in the tree ( Fig. 6).