2. The simulation method described in the present work is potentially very accurate – the restricted state space approximation holds well for liquid state NMR spin systems [12] and the relaxation theory algorithm used [16] fully implements Bloch–Redfield–Wangsness theory [35], [36] and [37]. With representative structural ensembles, accurate coupling values and appropriate spectral density functions, simulations of protein NMR spectra using the method described above can reasonably be expected to match the experimental www.selleckchem.com/products/Perifosine.html data to

instrumental accuracy. Simulations shown in Fig. 1, Fig. 2, Fig. 3, Fig. 4 and Fig. 5 are currently on the brink of impossibility (over 500 GB of RAM is required), but the results are encouraging – liquid state NMR spectra of realistic protein spin systems can now be simulated. This opens the following research avenues: 1. Whole-protein optimisation and benchmarking of NMR pulse sequences. We have published our preliminary work on MAPK inhibitor the subject, dealing with a small fragment [38] – the algorithms described above enable protein-scale effort in

that direction. Taking a more distant and speculative view, it could eventually become feasible to run protein NMR structure determination and validation directly from atomic coordinates, using ab initio or DFT methods to predict spin interaction parameters and then the methods described above to generate candidate NMR spectra for least squares fitting. Such “direct structure fitting” Casein kinase 1 has been demonstrated for EPR of small

molecules [41]. Its routine use would require significant improvements in the accuracy of quantum chemistry methods, but such improvements are quite likely in the next 10 years. The algorithm reported results in the reduction of liquid state NMR simulation time of protein-scale spin systems by many orders of magnitude – a considerable improvement over brute-force simulations using direct product techniques [1] and [20]. The method reported above does not require the spin system to be linear or regular, and does not require any modifications to the existing simulation code – the reduced operator matrices are drop-in replacements of their full-dimensional counterparts in the direct product formalism [1]. All procedures and examples described above are available as a part of our Spinach software library [18]. The project is supported by EPSRC (EP/F065205/1, EP/H003789/1, EP/J013080/1). The authors are grateful to Garnet K.-L. Chan, Christian Griesinger, Robert Laverick, Malcolm H. Levitt and Arthur G. Palmer for stimulating discussions. “
“High-field magnets have become an important research tool in many scientific disciplines. Originally developed for studying the characteristics of materials under extreme conditions, they have increasingly been used by other disciplines, including biology, chemistry, and geology, and have found applications beyond basic science, serving many applied fields from medicine to the petroleum industry.